Scaffold Ga0190336_1003284

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190336_1003284

Scaffold Ga0190336_1003284

Overview

Basic Information
Taxon OID	3300021492 Open in IMG/M
Scaffold ID	Ga0190336_1003284 Open in IMG/M
Source Dataset Name	Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-9-10_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3280
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)		Depth (m)	2011
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038026	Metagenome	166	Y
F069552	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190336_10032844	F038026	AGG	MLKFAIDKCGNEYLLIIEYEDGAERLIVKNLKDLLQVMADTTLYNLEGKSKHFEQPNYAKIEILWNSE
Ga0190336_10032848	F069552	N/A	MRKKEIAWFVVECTKPITIQLRCFECRIIFPDVPRQLAKNFQSLRKGMYSLVFALENTNCKQEYFLNNIIEVDVDSTRFSKANVEVETTIPNDEEYQRLRKLINDWYKQKVDTFSFFLGIVMYSSYRDWRRMKELGVKFLELWQEGFSKIGWKPEDVSDYEYYFGKDGRSTPLKSLGTTTFWD

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