NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190332_1014861

Scaffold Ga0190332_1014861


Overview

Basic Information
Taxon OID3300021491 Open in IMG/M
Scaffold IDGa0190332_1014861 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-5-6_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190332_10148611F036512AGGAGMYWKVPNYLKRYIRIQDVLKNIFKPCDCGEELKKCEKEKQYCAKRIESLSRTLTHSIILPEVTEHRKCVKEIKPWKIAKKMGNFDLVTADETYYALPLNSWIDVLNSIQPQVEKVLKKWRRDISDCDDFALVTASAVVASFAYDPFEKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190332_10148613F040420AGTAGMRNINRFIIIGLMLTISLTQFLALDSIDSHSYIDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEQSIEIIEPQTDEIIGYVDEDNKKY
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