NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190332_1004787

Scaffold Ga0190332_1004787


Overview

Basic Information
Taxon OID3300021491 Open in IMG/M
Scaffold IDGa0190332_1004787 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-5-6_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2818
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F102256Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0190332_10047874F036512N/AMLRNIFRPCDCGEELKKCVKDKEYFAKRAETLSRALAKSINLPEPPDPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190332_10047875F102256N/AFLPNKKISMSHYKLKVYSCKNCYLEFYYENHITHCPFCGNKVEYVGSIQENEIEEPIYALKYSTGEKIQKKIEKEEVIKEAEQSWYLWEE
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