Scaffold Ga0190305_1009297

Overview

Basic Information

• Taxon OID: 3300021488
• Scaffold ID: Ga0190305_1009297
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1851
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014691	Metagenome	260	N
F019588	Metagenome	228	N
F040421	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190305_10092972	F014691	AGGAGG	MKGIGFVSAVLILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYIALVVILAMAIGVFLSLVRVK
Ga0190305_10092973	F040421	GAGG	MREESVRAITMLTLAFIIGFKSIILFLQHSFGFAFTLFLLAWTCICFAFPDQLIGASIGQDLKLGEVIEKWARRRELKRK
Ga0190305_10092974	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVRDLLK