Scaffold Ga0190305_1000024

Overview

Basic Information

• Taxon OID: 3300021488
• Scaffold ID: Ga0190305_1000024
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45041
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (58.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5931
  • Depth (m): 1999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F055334	Metagenome	138	N
F076704	Metagenome	117	N
F084956	Metagenome	111	N
F084957	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190305_100002427	F055334	AGGA	MTSLIDKLNSVMDTLKNEIDSVLSGYKVMHFLRFPTASDYFPICLIVPIRITPLYRGGLLEDDEYSIIELEIHLITKVPYDYRGERLLKDLDAVMEKLRTLRHDESKWYELDYKGGVDLEYAPVEKWILQSAVIHVKVEA
Ga0190305_100002428	F076704	AGGAGG	MPEYGAIKGWKNRIRIGLESCSNESIWHDGRNPLLNTFTMDTSVDIDKVFVIGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEIIYAGNNSHLDLLTATGMYGEGLQSCKILMNTTSSSDSADYNRVIYGVKFHSYRTSVGAGDIVTESVDYDATNISTH
Ga0190305_100002431	F084957	AGG	MKLEDYKKKKIEKIKCPSGLEVTVNNITPYTLLKILDKLGISSTSEEIYSKPVIDELFKVFLQDPIIGKDIELDDLLREDYIFLHDLIFKRVTLPEE
Ga0190305_100002435	F084956	N/A	MRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVSGEIILNQPFTDDSAIITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQKAIIGKGNIISELECISRFDELAHRYLKEGDQQKYHGTLSEVIQQFISLTGMDITNKSSNDVDIVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKSDEIKYTIDKNSKITNISVETSQEDSYRRCHVRGVKIGEDSAGNDIYIIGEAVDEMVTSNKEIFIEDDTVLTEWDARQRAEQELKTRNELTDAIEITLADLVYPVFGKVRVNLPGINKILELKSLRYTLDENGLYTTLYLGRSYKSLSTIFRSLK
Ga0190305_100002440	F036512	N/A	MINWKIPDYLKRKIRIQDILKNLFGHCDCGERLKQCEKDKAYCAKRIKSLSKTLTHSIILPEVTDHRKYVKEIKPWKIIRKLGNFDLVTADEIYYALPVNSWIKILKSIQPQVEKVLEKWRRDISDCDDFALVTASTVAASFAYDPFERQVAFAIAWSNTHAYDLFITTEGTCEIYEPQSNAVVGRLGKTSGIYETKKIWFMG