Scaffold Ga0190331_1003133

Overview

Basic Information

• Taxon OID: 3300021483
• Scaffold ID: Ga0190331_1003133
• Source Dataset Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-4-5_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2945
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040420	Metagenome	161	Y
F050064	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190331_10031333	F040420	AGTAG	MRNINRFIIIGLMLTISLTQFLALDSIDSHSYIDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEQSIEIIEPQTDEIIGYVDEDNKKYIRIPVWDEKYYYLNLRV
Ga0190331_10031336	F050064	N/A	MTPNRKFKNIDDSPLNEAQKRYALEWLAWKFYNLLLKIGTEDGYCKSYDPLLIEDDKCHSYVFDLGDDGRHHPYKNLREIEDRLFNEVVKRIKKKVYTKK