NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190331_1002691

Scaffold Ga0190331_1002691


Overview

Basic Information
Taxon OID3300021483 Open in IMG/M
Scaffold IDGa0190331_1002691 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3185
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F048033Metagenome148N
F057026Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0190331_10026913F057026GGAGGMGGDEQILVLEEMICLFEEAMKGLKSAYEATEDENQKLKLTGGVLVFEFVINLMKKKVELLWN
Ga0190331_10026915F033663N/AMEDREGVKARGEMKDVTQVYGIRCKAKNEKIQDWDYDSLTNITFLYKQRRALFEDIREDGMAVPEFFFEIKRDMLMLRDLVLGKFNILLVIEEEN
Ga0190331_10026917F048033AGGAGGMIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQVEGEDLSEDMQKLIKKFRDAGKTIEYVDADRYDAYKGELRFHTKNFEDEE

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