NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10046670

Scaffold Ga0210410_10046670


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10046670 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3769
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y
F031613Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_100466701F031613GGAGMPITIALLPNNEDGSGSNLFYAIATLTFSGNYPAGGDT
Ga0210410_100466702F000696GGAGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRAIGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDSTAPPNQLPTDLLVPVKIWERSNGSTEDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDEAAADAIEDLVSAAVRREQQSSRRRRPFSARTGYTPF
Ga0210410_100466703F000739GGTGGMTHMHIWLKGLLAAAISGAAGGVLTGLAAVGIDPQHSNLQAGIGATFRIGLAAALINAVIGVAAYLQKSPLPAE
Ga0210410_100466705F006480N/AMRRILIGGIAFVLCGVVAARSKSDPLVFVFLRVDTTQNLAILRPMIPPDLGVQLDSGPRTLKTGTVLQCESTSHTHPAIVEGQAGEVRELLLDCGEQKFSVKTLEFSPRAK
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