Scaffold Ga0210410_10013687

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10013687
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6989
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018228	Metagenome / Metatranscriptome	236	Y
F019366	Metagenome / Metatranscriptome	230	Y
F035904	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_100136872	F019366	GGAG	MFYGEKESKALSPRQRELVVLYLSYALEDVRALSEMGSHFLQMAIATISEEANLDTPVQPIQTTTPH
Ga0210410_100136873	F018228	GGCGG	MITSAAEPYIWIWADAPYLREQAQRCTRLARDCPHLPTAHELEAIGVELMQRAAELDDLKEDRDAERPTRD
Ga0210410_100136875	F035904	AGGAG	MAKIELGDKVNCDTATVDQGKVRLGDWAPVFVRPTRAGEKVIRDTTTVDQGKVRLGDWAPVFNPKK