Scaffold Ga0210410_10011190

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10011190
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7730
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015004	Metagenome / Metatranscriptome	258	Y
F020232	Metagenome / Metatranscriptome	225	Y
F066033	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_100111906	F066033	AGGCGG	MTTQSRAVLQRILQRRTNWAPAGESFGCPRCHAKYAVTRRQTPPGMIPACETCDQEFPPTQDGEWLLYERADD
Ga0210410_100111908	F020232	GGAGG	MAEPSAEPIPPDFAEAFAYAVLVYEIWTPEEPGRLIEIGPRSYSIVEVCRFVDQFTDRLPERVYLKLRSHLHDYPDGKLKADLAADPSYATAVRCLRGMIERRTEDYRPRGGMAG
Ga0210410_100111909	F015004	GGA	MSTAKRLALIAAGYVLCVVAGFAAVTVNELRMPADVAQGSPGMVAFGDMILFVLVTGFVGVVPTWFLLRLFIAKAPRALFAIVFLLAALGPVSWLAVRHMAGGLNPPNAPVAVGALLGLFIAFVGIPRMVLGPVVVVIEAATFFLVRGRVTRALLAVAMLMDLVPLGMFALHMLRATRY