Scaffold Ga0210410_10009372

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10009372
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8449
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000781	Metagenome / Metatranscriptome	895	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_100093724	F009917	AGGA	MGTSGWTYVAVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNIIAERQGIHLEEQPMVNYVDLRNGGRHR
Ga0210410_100093726	F007488	N/A	MKIRAYEESDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRCDALARGLEDVHAWLPPEIAKKFGKRLTRLGWVRDDAWTPYCRKLR
Ga0210410_100093727	F106044	AGGAG	MPNLTSNATWDFNPGDPVTLNASFTFDLQDPNDNQTVSGVLTTLQGRTPLVTLAQTDNATISVVVTI
Ga0210410_100093728	F000781	AGGCGG	MLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPANASPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYMGSLASAPVTFGSPAAAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGVRVVKQTVL