Scaffold Ga0210410_10001852

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10001852
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19402
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F006229	Metagenome / Metatranscriptome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000185210	F006229	GAGG	MSTQAAAEFAALVNISAEKWPPRQRTYFGSLEIRPVEAGEAFAITPIRGCTGVMDLGDKRIMEYRITAREIAEDIAREINGDSGDGSFHGVFVAAGDVPTEAELADARRRLEEFQRRLVAAADLEWERTKNPMFITDLERRAARQLGLEKPWLYDAKPLADCPVCAEKIKPGVAVCRSCGAILDREKAAQYGFVQRDRKLVADSLRQGEKREKEAGK
Ga0210410_1000185217	F000696	GGAG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDSTAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDEAAADAIEDLVSAAVRREQQSSRRRRPFSSRTGYTPF
Ga0210410_1000185218	F000739	GGTGG	MMHIHVWLKGLLAAAISGAAGGVLTGLAAVGIDPQHFNLQSGIGATFRIGLAAALINAVIGVAAYLQKSPLPNDG
Ga0210410_1000185219	F000512	AGG	MDRRGTIYRAPTHFPLALATGNVENGPNRIAVLRETHETPENVAWRLERAGGIHRFGEPNYRAIWGWNRLAWIGGKFEDRDPATGSLLREVVELRQEPKYPAVNRWHIERWVAPEVYGSPRAWYAQTIERENGVSIPALGPYPARGEYEHCFTLETPRGEFLQLTATAAEHIARAIEWSRKFPRSAKKAQLYDRQQRIENDYDQWAYDALDDSVPAFHRQPFVTVA
Ga0210410_100018524	F000624	AGG	MTTHLPAILAAIVPIGVQFVLFLRWLHRRMRDDEIVRAFVRDIAVTHLPHIYTALREIAARQGIELAETPMVRFVELNGDRRGS
Ga0210410_100018526	F000703	N/A	MLVREYRESDLAALQAIHAEQGFDYPLPDLNNPLFVTKLVLADEAPAQQKENRQLEAGATKILGAALLRLTAEAYLLLDPSAGTPRDRWQSLLSLHAAAERDAWRRGLEDVHAWLPPPIAKKFGKRIERLGWLLDDAWTPYCKKLAG
Ga0210410_100018527	F000781	N/A	MLTVAQLAPLKDRDPYLYETLVKVVSSLNATSQRAGVDPSTPAPAPTPVASVMVQASNGWFDISLTDPSDARPGLFYFAESDTTPAFASPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPVTFGAPPTAVPGGGVAGPAPLPSSGSGVLPNGLLRGGNGFGINPGSRITRSPVL