NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000452

Scaffold Ga0210410_10000452


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000452 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46127
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (85.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000321Metagenome / Metatranscriptome1304Y
F000673Metagenome / Metatranscriptome944Y
F021825Metagenome / Metatranscriptome217Y
F105673Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000045229F000321AGTAGGVPKRRSVHFGVYNVRLLCALDKLLRDKPRYLGELSTSINDALLAVDLNSVELVTLQSRQKQTGRETQVVILRRLRKRIQQVARKRKCSMNQLVNSALLAFYSKTGKIKPTRSAKRRGVNAHSYDTMSELERRELHRMLSELPTTRSVSITAEEPDGTHYEYDRNLKATVKVTPDGERYPVKRFDATFEHGPQ
Ga0210410_1000045230F021825AGGAMGKDYQGCLDKLAAAAPETQSALIRSLLPGIEAALNSGQRLKAIWKALRKEGLQISYRGFHLAISRARKIRKPTAASSWGKPDKSPAAQGSQESKVGAVEERDPFANLKRLQENRPGFHWRGRRDLNAKVYGTDGSTDKNKR
Ga0210410_1000045231F105673AGGAGMQYRWIIGERHRYWNIKGWGHFVAFFRHNRLHFLRFAWHHFEQEVVPLRYHP
Ga0210410_1000045232F000673AGGGGGVEKKGFSRNFRYPSAKLRDQVRAAVKERGFRSEQAFLIAACEHEIRQGANTEATEQFEARVAATLTNLAKQVQGLQTLAHAQVALTDVFLKYVITCVVEPPEDALPAARVRARLRYEKLVRAAAEGISNKNRDTLKGMVADE
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Institute for Fundamental Biomedical Research
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