Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000307 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	60189
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (74.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

60189

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (74.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011251	Metagenome / Metatranscriptome	293	Y
F014050	Metagenome / Metatranscriptome	266	Y
F014439	Metagenome / Metatranscriptome	263	Y
F016589	Metagenome / Metatranscriptome	246	Y
F019520	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000030717	F014050	GGAG	MYNLEIWLKGIAAAGIAGGANGVITGFAAVGIDPAHFNLQSGLRSTLAIAGVSALMSSIIGIAAYLKQSPLPKE
Ga0210410_1000030722	F019520	AGGA	MCSCLSDHHFSLHPVLSVFICVHLWFQLKSVSLHIREYKSSDLDALRRMHAAQGFGYPLPDLESPLFLSKLVLEDDGEGGMRALFAARENIASGREEADANSPPADSSRVTMAILQRLTAETYLLHDPDAGTPRRRWECFLALHEAARDAAIERGLDDVQAFLPPPIARAFGRRLSRLGWTCDPWPCFSRRIP
Ga0210410_1000030724	F011251	N/A	MNPYWIIVGLTSLVQFFIFIRWLHRRTRDDEIRTAFVRDMAINHLPHLYHALRQIAGHLGIQLKEPPPLHFMELNGQDRKR
Ga0210410_100003074	F014439	AGGAG	MSVTLTLTDIDPGTTQLYAFGTVQLSGNYPSGGDAIDWTQLAKQLTVRGQALESSMTDPAYGPIQASFTVQGGTPNQYQMQQGAAPNIWKMRGYSTGSAGAEFTGGASYPASATTDIITFSAQFRKLT
Ga0210410_100003077	F016589	AGG	VIQIIRETHETPAGVARELVLAGGFNRFGEPNYRAVWGWSRLDWIGGKWEDRDAGGRLLREVVELRREPKYIPHDRWHIERWLPPESYGSPEQWYAETMEIQNGRSIPALGPYPSRGEYEHCFTLEGSRGEFVQLTPAVARHIARAIEASRRVPRAKSREALQERAWSEEREYDSYADRVLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000307

Overview

Ecosystem & Geography

Associated Families

Sequences