Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000263 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67893
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	58 (78.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

67893

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

58 (78.38%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F008273	Metagenome / Metatranscriptome	336	Y
F016585	Metagenome / Metatranscriptome	246	Y
F037404	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000026343	F008273	AGGAGG	MNSNNAATRQDVIENSVNHQISSLANSATSPGKLETLLAAELDHDLMAWPRQYLETYLDSDASGRVPLDAEQLQDVLEAAFDRDAAFAREYLEELSRERGPKTLGDSELQVAVARAEGKHSEYELLFDPNDTQDLKQLIEKLDLRAWQKQKAQTSPALETQPDAERRETTASVATHQPGSMAVDLHDKTTGTDVRKLLGGGELPAGLQSALRQMAPDARIQKAQTDSGTYRGGIIAETEKTLIQQITSHTAVIHGKDLLEMIPAVGENVRIVYSNDNGRVLSLKERSKTQELGR
Ga0210410_1000026349	F037404	AGGGGG	MSPVVALDLKRITAEVAARHGMLLRPDDPAMLLVTMNEVVLEQVIGSVEARTEEIVAGIEAAFRSAQREALGSVEREARKAGIAVREEIQKDIDAGRLHARELIVELNRSYTRSAVRLWVSIGVVAASGLIMLGVGFGVLLARVLK
Ga0210410_1000026362	F016585	AGGAGG	MENRAQESGMDSVHGARLFSNVLLVAAAPMVSAAALCFLPGLGTSQMVLPGAGRLALVVMVMALAFSGVILCTLLNLQDTMRRALLVLFATVLLCSGFVALVGWFAVSGASGF
Ga0210410_1000026372	F000321	GAGG	MYISHVETATYVQLREPPSPRTVGIVAKRRSANFGVYNVRLLSALDKLLRDKPRYMGELSTSINDALLAVDLNTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVAQKRKCSMNQLVNSALLAYYAKTGEGELKRPAKGRGVSMRSYDTMSELERRELNQMLSGLSAVQPVSADVEEPDGTYYEYDRNLKATVKVTPDGERTPVAGLETQFERAPQRGQHKTAHEGTTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000263

Overview

Ecosystem & Geography

Associated Families

Sequences