Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000253 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69416
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (88.41%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

69416

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (88.41%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001178	Metagenome / Metatranscriptome	756	Y
F001185	Metagenome / Metatranscriptome	754	Y
F015323	Metagenome / Metatranscriptome	255	Y
F048872	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000025310	F001185	AGGGGG	MPQRSGRLEKRVKVEIPAQISSSVDPAEMEPAATENVCSLGVRILTQRARDMNERLWIRLLEGNLRTLARVVYCQRLPDGRFGVGLQFQGNSFNWPKSLWSGASD
Ga0210410_1000025315	F015323	N/A	MKRTTRIARPLLVSFAAANLIGCADLRSNEGRNTNGNIIYLDRDLSSGDLSQWTHLDYGLGTDVGTGMSGAGQLWYHANVAGRRAAGLTVTPTAHASPAANSDSVFLWEPRQSWNLQPYEIWLRTSVMFPSAAIISSNSLSGEAPFVPTTGDWNWFLVFHNDSSPLPRCAKEFGNISLDVKADDPVVSGAIGKNNVRMALRIMGGDDCSPNMVWVDGPPLQWDHWYEMLLHIKWDPTGGIVEWYLDNISAPYYSNLKIPTLFTRPKGYLSPSYTTLTLCNYRMHAPWNSTTYVGPLVVGSSRSSVLSAF
Ga0210410_1000025347	F001178	AGGAGG	MIKASAGLANQLIDRILELSADAHIRRRGTGKDSPEFHKLTGAIAAYGKALALLTALQRREEFYAMIDQFDTPAFAAAC
Ga0210410_1000025367	F048872	GGA	VTQEETLTIRETPVGDLRIWCAGRSKAMNVHYDSRKHLITVKNAGRLEHEKDVILHIEGYRAGPDRDNRDARLVRNEQPVNMEMLILGELRVLTGIGRQRSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000253

Overview

Ecosystem & Geography

Associated Families

Sequences