Scaffold Ga0210410_10000251

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000251
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69842
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (77.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003174	Metagenome / Metatranscriptome	503	Y
F004193	Metagenome / Metatranscriptome	449	Y
F018063	Metagenome / Metatranscriptome	237	Y
F043538	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000025130	F043538	GGAG	MKARYIKILAMAVLTLALSSAAKAQKTSDIINRGDDFLAVCQYDNNHPPDVCLAYVAGVVGTLALNWADTGQRICVPDTATVRTTLDLVLQYIKDHPEKREQKPIFLVAQVTIKNYVCEVPKQHTATAPKVEPEPKARP
Ga0210410_1000025132	F018063	AGGAGG	VKTKLKDKGRMWLWGFLAVIVMSQLYVVRELLAAFALFTLGFATIAFVVVSLYMLPHCWELAVAHLADIRRPILDVASVSRENQGAD
Ga0210410_1000025138	F004193	AGGAG	MRGFPVPKGRRSKRVVAKKRASLVVNLDRNQRRIPCLLLDSSKEGFRLRGIFHLRRSQVVELIFDEDPLSSKRCSVVWVGKAGSEQEGEVGLETI
Ga0210410_1000025144	F003174	AGGAGG	MRFRSGCLLFLFLASSVSLRAQIDPIPNLPVQPIPLPGGDILAPYGLFNQFIPGPPGQNPPFDPMNADPHGITNFRGVTAMGYTSGMTDDKQFVVITDIRVYQGEYIGGEIANPDPTQSAGATKSARAHGTFVEI