Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000196 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85335
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	76 (89.41%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

85335

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

76 (89.41%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005419	Metagenome / Metatranscriptome	401	Y
F039315	Metagenome / Metatranscriptome	164	Y
F046308	Metagenome / Metatranscriptome	151	Y
F085191	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000019629	F039315	N/A	MKAMAALDKMSLTELEDLAAKLRHTIARNPGHSRMEQVKLEDVKQWIAIRQNGDSSESEP
Ga0210410_1000019634	F085191	AGG	MRGLGRSTTEGDPYRFFSPEQVDKILCEGVRRGRAGSHAAIERILKLEPGIERAELWQRIRQLKYPSNGTRYRRIVWSTDDDQILSRGYEKGWSGKQQAIRELLKRHPDWRPHLIWRRAAKLHLTRKTPKRGQERSRLAWSEDDDRILLNLAGYKTSRVLAKLLHRSEVAVRYRLMVLGKSSRVHLEGFARHALARDLHLASSTIQRLIAGGLLEVRDPRITRESLDNLCQSGRLDAIPQNVAPASDGLTTGLEREMTTLAGSDPPAGDRTRQSTPSGKLSRAKRVWAEVAKSLGVAVEAVQNFVARGVLKLYDPTITEQSLRHFCRRYGSLIDYDFLNRETREWLESSMDWVRTAGESTSRRLAPLRKHARVIRHCTACDREIRGNAFFRHIKKCDQRCSANNQNQMVSNSAW
Ga0210410_1000019652	F005419	AGGAGG	VAAGVTEAVGEGKDLQTNRPLRGTRKLRMGHANGVEGQRFFLAKPGGSNGVPEFTKELTGEPEAMVESLKTGLSYFIISEWRGVADFSGKKPQLGREAARGAPKTG
Ga0210410_1000019667	F046308	AGGAG	VTQDQDRKMEVIKFTDQLRAAGVTTVTVSYYGDGDEGRAEPPQFQDAAHNPMDESSLQANLDIRKLGDLLEGFAPEGYEDGEGGHGTITFDLQTGKIRVEHNWYEIVSNPADPREI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000196

Overview

Ecosystem & Geography

Associated Families

Sequences