NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000192

Scaffold Ga0210410_10000192


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000192 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86543
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (77.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000207Metagenome / Metatranscriptome1597Y
F000529Metagenome / Metatranscriptome1047Y
F005917Metagenome / Metatranscriptome386Y
F040214Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_100001922F000207GGTGGMKMILASVLTTILIVAMTLAAMFILVRATLYVTALESPLQRAAAMGAELLLGVVLLLGTVWLATHLAVRIFATKESPSVGGPVV
Ga0210410_100001925F005917GGAGMLVRPHLPGYRWLHFLRNAAVRTGVYVGVCLTLVFAAWLIIANHVPFLEHFAMERNIAAAAVLCFLAAVPILRFLRAPGYLLASSLIGWLIFTLCYWAFCLIFHRLSNRVSTFQVFMLGAVVYMIVTTVLWIGALIWRAREAHISHPNHHAS
Ga0210410_1000019260F000529GAGGMFSAMLLSISIVALSQFALYYWRAVLAGVAAQPVSDRVLAAARVENGRVTPGHFETLAGLHDLTPDLSPTRGGLGYVRLYYRAVEGLDTLFGKMLPSVAVWSERERVICARYAAVQVGRRLQANLELAASMRSC
Ga0210410_1000019274F040214GAGGMDGDSQEQQAQPGTPAAFPRIWVGYLLGAATLVAEMVAIYLHPELAKEPLLVPPLYLFLANFICLVYWLVCAYEFHAVLMQASAGAYSIKPIRAAWFHLIPIYGLYWVYKWPRELARFVNSRLPAPLMKPDRTGLAVFLAFVVFLFLDRGFGMILLFWTASHLSRCLRYALAARPVSPAGQVPFS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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