Scaffold Ga0210410_10000156

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000156
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101887
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (83.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021824	Metagenome / Metatranscriptome	217	Y
F077419	Metagenome / Metatranscriptome	117	Y
F079643	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_100001561	F077419	GAGG	MQNNAGVDQSVSDAELIALLREAQEEMEVRGELNQLNLLLRDFAREQLRQHLLRRVEFVQMIELHRQEYRTS
Ga0210410_1000015622	F079643	GGAGG	MNINCGDRERIFLDGSPEEWAALEEHANGCSLCAEQLRTWKQLSAAADELRDYQESPALWARIESSLGRPQAATSSGKSFWNSFDFWRHISPAWQSALVGAVVVALAISSGYLFTHRTAPIVDQGNKLLKTSALAEVERTEREYMSAIDKLAADAGPQLAAGTPLMASYREKLLVLDSAIADLRIQAGENPSNAHLRYQLLAMYQEEQQTLQDVLETKR
Ga0210410_1000015689	F021824	AGG	MPDQNHPIRAHKFRVWTCMLLAALLLYNPFAALCFSHGTIEVHTLQRNRAFVGASELQHFSPVQDDIPQTDLNLESRREVVAAPAGSFVARGFEREVEVPQSDIVSKVWSRPPPLA