NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000147

Scaffold Ga0210410_10000147


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000147 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104628
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (88.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003015Metagenome / Metatranscriptome513Y
F004329Metagenome / Metatranscriptome443Y
F017551Metagenome / Metatranscriptome240Y
F026067Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000014737F026067AGGGGGMRLPTFLFALCLATMVAAAAVSSRQNGPELIAPPRQNVTAIQNNYDGSRMWRRAEIRVIPLEQAEWNRAALESLRTRVAQAERESAGLWLLDSNVHQQLSSQVQLMKELLTLAEQQQSNRGKSPNALAVERRLNQLQGQTMCEACHNGVVARNHGVGTRMAQSTE
Ga0210410_1000014748F017551AGGAMSSKTATWIIAAGALMMFVGLCFLPGAFGEHPEADMLEIGAAQFSMGALVVAAGIYAKARVLQFAIASGEPRKDPAAASQRVRGGCDLCGSEAPVVQCKVHQLHLCGTCLAQHYDVRSCAYIPTTRTATNKAGRKLANARGA
Ga0210410_1000014759F004329GAGMQTRVRRSHPGKQSAITFLAVLTALGLCAFQFGDRYGLNGMPFSQIQPLVSDLAKAQRMAKQGNIELHARQPVRGEAVTLRGELTDANCYLGNHTHGYDHAFCAKFCAAAGSPLLFVRDQGGQVYLVLNQLNGIRLPENVLDRIGVPGVVVKGRTLEADGLHALAVEGLSP
Ga0210410_1000014766F003015AGGAGGMDRTKSLIAAVAFLLIGPGAVAQQSSTPPASTGNMSAPASNTSTVRGCLDGQRGNYIVVEDKTGLVYVLKGVGNKLDSHLHHEVEVKGRVRSGIIKTGVNPSKSGSNPSDTAHGVDGVPLEVADVQADVRTIAKHCKAADQQ

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