Scaffold Ga0210410_10000089

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000089
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 153042
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 120 (83.92%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000438	Metagenome / Metatranscriptome	1143	Y
F000503	Metagenome / Metatranscriptome	1073	Y
F008148	Metagenome / Metatranscriptome	338	Y
F015638	Metagenome / Metatranscriptome	253	Y
F019880	Metagenome	227	Y
F066676	Metagenome / Metatranscriptome	126	Y
F101813	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000089140	F015638	AGGAGG	LGVPVHFVIEPAYDIVIEDADGRHLWLECLQDLEIARQRLPVLAARYPGTRLTLWNHRTHIVLAQTDGS
Ga0210410_10000089142	F066676	GGAGG	MNFDLKGAVQKARDGAVELGAQKAAEAMNQANELLMLLQDAGYKVGELEVEVSVPPTITINLKPGPMTNDSKLDGVFQANRDNEVLALVLGTLIQANKLRHMVKLETIELKDAKIVLRTSPSISLHWKEKATASTAADS
Ga0210410_1000008936	F000503	AGGAG	MSAEAARRAPTMPLGELVRLYRQHAGEFGKPVVLSAFGLAHTETERLFSGYDEDYHISRFFHFTEADGESFSINGFSATHVSLDAEIETIL
Ga0210410_1000008942	F101813	AGGA	MNPEISSSTATLNPVLPHCQHRTASGRRCRMAVSDPDSGLCHKHAAERQHQLDQADFSAALIGDVQEFRSASDINHSLGELFKLQARNQISPRRAAVMAFTCNLLLHTLPAIERENESKGVQIIWDLPRPDRSEPRPENPTYADLRT
Ga0210410_1000008954	F019880	GAG	VLTFILGPILALLPKAWRNSLPGGEAVNWRVATVLSGFAESAIALVAMMYWYSYSMTTWVDRGLDSATTGKMPTQVTDQEIGFTALVLVATHPLTWLLAYAGIEGAIRLVAAAFAGTNLGILPFFLLRKFLAIGSGERRPRSAQAAGYSQGNLSSYVGAIREKAMVKGLAEVPDELVFIGKPPEEFLEIRSSRRKENWEPPRTVRYLDTYFRLESFSGGGASRPFRYMLRKLSAGVMGRTVLVYSPEEPLIRRNT
Ga0210410_1000008968	F000438	AGGAGG	MDHFEEFGKRLDEELTRLRRFIEEEVAPETERRTAQILREVSEKLTEAAGKLEARNAARNPEKPPNAPPS
Ga0210410_1000008999	F008148	GGA	MISPQLTAQETAAAQRETNQSLAIVEKNLDSTRGKRLNATQSDLASKVKSFLKDAREAVRIGDWSHARSLAKKAQVLSEELASSL