NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000082

Scaffold Ga0210410_10000082


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000082 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)160836
Total Scaffold Genes159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (75.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000887Metagenome / Metatranscriptome848Y
F003704Metagenome / Metatranscriptome473Y
F008058Metagenome / Metatranscriptome340Y
F023870Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000082118F008058GGAGMTDRRSSGAALKRIWRDSLLGACLGLSGCVIGYGPCLFQQPVKNTLTGHVHFRDYPAPDGLDNVPVLSLDRTAYVYAPAQSHHCLAANDLQLVGVAEFPPNVIENSHVTVDGVLFQAGSGRQHTPFLINVTTILPIPARH
Ga0210410_10000082124F003704AGGAMNARTISQGNPQTAQRRFDRKFIEEHNLVERYLEGKLPFKGARDLENWCRLNPEYLNELKLSERAHATLKLLEASGQPQDLSEAKPPWWKTIYALIGVSVLAFVSLVAFWVLFGKYHALSAKLDDTRNLIARGSLVQPATETSAFLSPDHEAGIDRARVIVNSKAPLLMDMHIDLAYTKQLAQFRVVVDKKDQGRALVVNNLLKDSNGELRVTLNSTGLGVGIYNVRIDALPPHGSPIEVGWLILDVR
Ga0210410_10000082129F000887AGGAGMKNLFKLLISLSLLSTVMAGCVVAPAGYYHRGYYYGPRVAVVAPAPVVVVRP
Ga0210410_1000008260F023870N/AMNTTGMRVRRRIRNGALGLMSLALVFYFGVIALLIHRGHH
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