Scaffold Ga0210410

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10000039 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	225113
Total Scaffold Genes	208 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	181 (87.02%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

225113

Total Scaffold Genes

208 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

181 (87.02%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001811	Metagenome / Metatranscriptome	631	Y
F002291	Metagenome / Metatranscriptome	574	Y
F046503	Metagenome / Metatranscriptome	151	Y
F059287	Metagenome / Metatranscriptome	134	Y
F102675	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000039133	F102675	AGGAG	MPYERQKTIRKELERIPRGLKGSPQNLVRQIVTSQYQHGKTFNESVEIAVTFIRQSCPYFTPKILPPLT
Ga0210410_1000003916	F001811	AGGTGG	MRGFSSSVLSCLERERLEEELHEACIRGQYLSRLRRLTSPERVALDQREQAAQTRLKDHDAEHGCQR
Ga0210410_10000039166	F059287	AGGAGG	MSHLMKLAEALRDIAEERSKSEIEQALDLCAGFADRVCRVPEDPDGYPETLLKLIAAKFSPLPN
Ga0210410_1000003920	F046503	GGAG	MRAGLKFTVRSALGGVLVSFLISSSFAQQPEQPILTQTTIRVESSLVLVDVISQDPNTGLPAQDFKKENFRLYDNGHEVAVASFDAGVRYATRPLILWLAVICNERGKVGGSREFAGKESLFRPALDHLDKRDTVGVAHWCDNGETQLDLLPTVDRDAPLRVLADTIKPISFEAGGKSNLVGEDTYRKMLRLIIQDAHRRNPQPLPVIVFLDGDHTGQPRYELDQVVNDLLETSGIVFGIKDQMAPKVYGLGNGQVSEISHYVAEQTGGQYFTAAGKDYATALDLILVQLHFRYELGFIPPTLDGKRHELKVELTKEAREKYKGIRLNFRPVYIPVPEVPSWAR
Ga0210410_1000003922	F002291	GGAGG	MSSKAVPQGSFVVLWAGENPALHSALVEELRAADIPFADKTLGDDEVAPTADTLPIDWKPRFGFEVTVNSLDLAASKEVLEKLLDEEPADVEIPAQDGAFADEPALTVATETHPTVEVWNGNDDGIAQFLTAAMQENEIPIHLENPGDQTRIYVSAANEKRAREIVREIVEGAPPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210410_10000039

Overview

Ecosystem & Geography

Associated Families

Sequences