Scaffold Ga0210410_10000019

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000019
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 296573
• Total Scaffold Genes: 294
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 227 (77.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F007543	Metagenome / Metatranscriptome	349	Y
F012246	Metagenome / Metatranscriptome	282	Y
F025666	Metagenome / Metatranscriptome	200	Y
F028643	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000019181	F012246	AGGAG	MKLITNPTLSASKSKTVLAIVLSISLLATGCSAQWISIALADLPVLTQMALNIGTLITTLQSGQPISAADVAAIQNISTQASKDLNLLQSLYNQYKLNPTATTLQKIQSVITDINQSLPLLLQAAHIADPVLSARVGAGINLILTTVASFAALIPQTSPHFTSLKVGHPTPTIPKASDLKKQWNQQVCGPTSNSALDFSATGCTVK
Ga0210410_10000019292	F000262	AGGA	MPCGVMSFSPSPLNFTHMPLGKNGVKPLLRVSLLGGIALYFALTLSCGGINVGEVQPQDLCQCVPLEPPIADFRHNEKHVPIPNVTPTEITVDAILGWPQDVIVLPDAPRTGRELQVFHVAQVFLQNVSVNSVDCDVNLEISQTADRNAPRVIVETPVDSEFCSARKTIQSQLAKHGFRLDAEHGGELPQALAAEVLGMAFEDFDHNRGSAQVATLWELHPATVNLLP
Ga0210410_1000001948	F028643	GAGG	MTFMRCSIDKSGADVISGILNCVCPECGGRMGERGKEFKCQGECSRDWRQIWEAMLSSGH
Ga0210410_1000001955	F025666	GAGG	MMEHNTIRYLRASRKMREHETILYISDRTISSDSVLAALKETGCEVVSTDSPTVGVALSYAAHSLAAVVLDKRTREEAGFDLAQSLSQIRPQVPVIVLGGDPIDCSPSRTNKCVGTDQLASTLQYLLEAEPVS
Ga0210410_1000001962	F007543	GGAGG	MDSNYVFLCGVMWCRFGLQDAGKELLRAADSRDPDTKALACAMFVKGVRRLRELGKRAQP