Scaffold Ga0210410_10000015

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000015
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 320262
• Total Scaffold Genes: 303
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 260 (85.81%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007333	Metagenome / Metatranscriptome	353	Y
F008970	Metagenome / Metatranscriptome	325	Y
F009349	Metagenome / Metatranscriptome	319	Y
F012713	Metagenome / Metatranscriptome	278	Y
F019901	Metagenome / Metatranscriptome	227	Y
F030501	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000015107	F030501	AGGAGG	MKIKLSIVVLVGAVLLAPGLALAAPQCFQVFSGVFVRFEQPITNTETAQTGRTWGALSSCDGLVSWPVIGSSHHSKTDGLTLSYRAMTVDANTCGAVDFIGTLSGKPLSGPFQLFNQRTNFGNSGTWTQITCPKPPKNGAQLPSGVDALGNAAK
Ga0210410_10000015150	F012713	N/A	MTLFSALEDLQETTLRAFAGCLNKLEYLAGLRDKGGGYEHWGLARVYGDLAARKALARAHRSLLSKVLAMPIRKLAEDAKQSSEAAGVPPEAYVERLATASPSLLPQGPGAGSARHLNSVLHALSSLLKNPKGDASPPSGSRPRQPGR
Ga0210410_10000015198	F019901	GGA	MARCDNIASNPLNFMANIERGSCRFKPVQEADGKFVLRMEMFHQTLPLLKDATVDFELLNGTTMDQARKLAESVNDRVTGVLITRP
Ga0210410_10000015199	F008970	AGGA	VFSQPTSPESPEEKKPESTISAEGPELELLLADSWNRPLRKRLFDHLRDAISPEKLPPLRLTSRPVDVGMLAGDILSLPWYRTVFTNLGDVISPETLPPLQLESRPVDVGELIGDQISHMWWSSLLRSLADVAAPERLPALQLTSAPMDDPSLTAGAMQLPRWSSVISTPKVFYPDKPKVAFVPAARVAAPPPKPDPAEVEFVHTLEADLKRDLRRSVFRQRLWVSLAVLEVLALIGTSIWWK
Ga0210410_10000015242	F009349	AGGAGG	MKRTFSLIFLFCSLPGLLAAQIGIYQHGSVVRMHMGECIPAGHGFMVAFGGPSNSIGPESCPEYTLVSDSVVFVIVGKLSNSLIPLAQTIDFRFRKNELAVRVDDAKHETKFAIKEMMVRSEWDRLQRHIEEKMRASDDHEPEVRSR
Ga0210410_10000015288	F007333	AGGAGG	VQQELRHARTLGLSVALGGVMGAAIGAAPGHVGVWGTAGIAAYIAISLVGGAWKHGRNLGDKS