Scaffold Ga0210410_10000014

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000014
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 320811
• Total Scaffold Genes: 306
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 244 (79.74%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F001727	Metagenome / Metatranscriptome	645	Y
F006427	Metagenome / Metatranscriptome	373	Y
F038361	Metagenome / Metatranscriptome	166	Y
F045233	Metagenome / Metatranscriptome	153	Y
F046586	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000014100	F001727	AGG	MDGGVRPPHRSFRISPVDRLGRRISPSVLDAAEEVGRRAIEHAERELIDPAVAATLLEEAAATVSRALDAKRHHTQNAVRDLPSYLFLAFIRRVNRTKKRQLLLEDAVQVRSTGSHNSTDPEAELELKILVDELLTRCEPVTRDMFYRRTQGFSWKEIGLSYGISGHAAESRFNQALHKVGVRLGLRSKL
Ga0210410_10000014103	F046586	GAGG	MQTRAPKGQYRVIGLDPIDSLTWPSGPLSKDCDTLDEALDLGDRNRALYLWVYIYDDAGVLLHETGCHPEQLERIRELNQKLPEGPKTKP
Ga0210410_10000014121	F045233	AGG	MDLRCPKCNSNNLKRVSLAYQEGTYQIDARSRMRGLLFAAGGPGILVGRTSTRGSQQSALSKRLSPPTKWSYLKVVGWSGVVTLIALVLYVQHVMASPVPASSFPVKLYVVFAPLVLFVLLGIVWRHNHSAYEQKYARWNESFICERCGTVSQQALR
Ga0210410_1000001468	F038361	GGAG	MKEPAKKERAKSEPVEQKSTMLTVQVLWACHAWNATPEEAARQVVADLFDQLARGGSVSVHVEELDGTEYTLEVTARGEIPGTT
Ga0210410_1000001479	F000626	AGGAGG	MSIVKKAPGIMTREVRLEEPVNELLEDYSRFIESNADHVINAVIKKVLWRDQDYRKWREARRTAQPGPDKANPIEARGRA
Ga0210410_1000001499	F006427	N/A	MRIKDRAALEKKNKELLDFARSYLSEAFPNPDRQGCPPDAALRSLAFNPNESEPTVTEHLATCSPCFRRYSELLGELKSQPRVEPRLSFTRISAWSKAHPVLAGTAALCMLLIVIGVGLLLHGIRQPNTPPMDTHRKPNPTAPLNPTVAYSPFSLDLSALSPVRGSESATGTQRRVPVPSSPLDLTLTLPLASAEGRYDLRLTAGTDTVWSKSAQAHLVKGKTLIQVEVDFRQIRTGNYNLEVQSSTGIRLVQPVSVQAASPKSAEQTP