NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000008

Scaffold Ga0210410_10000008


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000008 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)498155
Total Scaffold Genes413 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)339 (82.08%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F000742Metagenome / Metatranscriptome912Y
F004848Metagenome / Metatranscriptome421Y
F004904Metagenome / Metatranscriptome419Y
F010047Metagenome / Metatranscriptome309Y
F013872Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000008100F004904GAGMNWGTGPALGPLTFFGYLICTVGAALVWRHRGDFFIYFQDELSIFRRNFSRYTVIGPFYIPREDSRFKAIPTSVIRSVRRLPRSRFNGGPILLFLGLLLVFLDFFI
Ga0210410_10000008196F004848GGAGGMVMKSGERWHCANAGCGCSVLVEASGEIEGRNPRCACGGAMKKDFSPPVFRHMDFLQFPDPELALRHSAEE
Ga0210410_10000008259F000742AGGMNPMRILFGRTVVRQGLALLACAALLFFAAGGALLHQHTNGPDTACHICQALHMPALAAARLDLASTPELVTWYSSLPQHIAPSNSFCLHRSGRAPPIA
Ga0210410_10000008272F000043N/AMFYQLGWTTLPGLRGLSVSEFRATPTSAPDNERGVAIEFANEAERDTFLQQLEDYFAARRFMNTADAFDTVKAYALERAPKA
Ga0210410_10000008375F010047N/AMSTAAGAATAQPKQGGFRRFWRALRQIFHEVVGGVFAVFAFAWLNAAFRAWTRDTARWLIGLAVAVALLFVFFAVTSFRKARKI
Ga0210410_10000008405F013872GGAGGMVKPVKRETKKPYSKPSLTVYGTVRELTQTRGARGHKDKVGNRAPAHTHV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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