NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000007

Scaffold Ga0210410_10000007


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000007 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)533175
Total Scaffold Genes494 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)389 (78.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005986Metagenome / Metatranscriptome384Y
F006188Metagenome / Metatranscriptome379Y
F014534Metagenome / Metatranscriptome262Y
F014895Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000007174F006188AGGCGGLATTAILSDLVDVIASEMSVGVERAVECWMSEIEQAPTDIHLTSLGRLNAVCEILEEYKKLTGKTQLTDRSVC
Ga0210410_10000007192F005986GAGMAGSASVDCDRAEKVNAMRVHTTIAAVLLATTLLAFAYKTESLQDLIARAASARVEDRPALCVEIAERQLKSADELYTAGKVDDARTAVQDVVTYSEKAHDAAIQSGKRVKNTEIEFRKMAAKLRDIKRSLNFDDQAPVEIAADRLESLRTDLLSHMFGKGK
Ga0210410_1000000722F014534GGAGGMDANYLVLCGMVWAQFGEETAGRELIRALASSDEIVRVLARTLLEQGGGCSKELIGQALAEDEISESMASICAFEQGQLSKFKSWDGTAWRTAGLA
Ga0210410_1000000770F014895N/AMKYCLALLLAAIAISSLSAAEKLYQTGKIVDLRQKTKSRVLYYQVDTPVTKDEPDYEVSVQIKDTIYVGEYAPRHSGDTLPEEWNVPDAEVRLRLDKHYMFLTRPAGTELQFVITKRMAAASAQKIPEPLSQKK
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