Scaffold Ga0210410_10000002

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000002
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 698438
• Total Scaffold Genes: 631
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 493 (78.13%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000219	Metagenome / Metatranscriptome	1551	Y
F002814	Metagenome / Metatranscriptome	528	Y
F006203	Metagenome / Metatranscriptome	379	Y
F018037	Metagenome / Metatranscriptome	237	Y
F031637	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_1000000236	F002814	N/A	MTRLRTLALLIVVAHWIVAIWHLFLAASVLPAPNNSVSWLAVVLLSLLHGGVSIALWKLSDKLIGLVSLIFFLAALSADLYEHFLHASGNNVFMVAPGDWAAWFNASVFILLGLEILGCSLGVLSLGGRTRKHSTPKPNSNLPKQGHTSLSSRQFNALMQAKS
Ga0210410_10000002397	F018037	GGA	MICKSTIRRAFAFLTGIGLLLAPATGVAQQTAAQQTNPLSAVLPLTTKSPEARRLVEEALTLYLDRVEQEQSIEILRKAVQVDPDFAMGHEFLAQISLDSAEQVGEQEKAFASRSRATTSEQLVIEWYQDAADHKLISAITKMNDVLNQYPHDKWVVWMTTWWLQSQAQYERVISVYERSGITDSPGLINNMGYNYAYVRQFDKAFAMMDKYVALLPNDSNPQDSYAEILRLAGRFNQSIEHYRASLVINPEFYSSQFGIADTYSLMGDQVRARKEYEVGFKKFSSLPELQQILWKTREAATYVRDGDYDSAQHAFQAIADYAHARQNSQAEADTYRQMAMCEQNPKQALVYLGKAEAATQDGKNALRIAITQELAQILRARVEVALKMGNKELANSNLSRLAGMSDSANDKLIELAYDGAAGAVLFSEHKYDQAISHLEEDTNNPLSLKLLAAAYQKIGYSAGAKRTNDTLTNLNDPTLEQALIVPAFRKCTDAPSCNGNAKSAALKK
Ga0210410_10000002508	F000219	GAGG	MGFYRIQIGIAVGAGVLVLLSFFGYLMWLNGQGPVLARSEDRDPLSGTPNSISLNPLRDRSTERLAAKYLDALRDGHCQEQLAQWERDYRKKYAAFICASEAQHPLLSWKVVDWEDNPPLRILHYQGKRRNAPGQPGTYKELFSVTLENKDGEWVVTKYDAMY
Ga0210410_10000002534	F006203	GGAGG	MLDSTVELMGDLLLSALPVVIGACIVGSVFAALRAVRSTHVRARR
Ga0210410_1000000272	F031637	GGAG	MKTKKYHATGLCVADAAREQGAQQEIDSFLRAVRSYPERFACEPYLSFQQHLSSIVTATHQSTADE