Scaffold Ga0210410_10000001

Overview

Basic Information

• Taxon OID: 3300021479
• Scaffold ID: Ga0210410_10000001
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 721673
• Total Scaffold Genes: 692
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 504 (72.83%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F000138	Metagenome / Metatranscriptome	1954	Y
F000954	Metagenome / Metatranscriptome	822	Y
F003137	Metagenome / Metatranscriptome	505	Y
F003215	Metagenome / Metatranscriptome	500	Y
F011313	Metagenome / Metatranscriptome	292	Y
F017861	Metagenome / Metatranscriptome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_10000001119	F000954	AGAAGG	MVAVVLAPVLLVGLALLAAGDWRTVGPTAGGDQVLVSSVTSQKHGLKTAWVRVEYKEPIRLPQGGPFVELRARVRFNCTSGSSVPIVANSEWFYSRDHSGKLVVSKKTRHDDQFGQVAEGDFGEMTREFVCKQK
Ga0210410_10000001219	F017861	AGGAG	MLNRGKVTLVESAVVLALMGILAGAIGGLAIGMVTSPKSAATSGTH
Ga0210410_10000001340	F011313	GGAGG	VSKTAAVVLAFLSLTLFPTRSKAQLIPSGNLYAGAAYASSEDVVNRLAFRGWDGSVEVFPFHRLSYIGIVLDGSGIYTRGAANSGTIQQYNLVLGPRVSMNYGKWRPFAHVMGGIQQTRSGGNLYHPVAFDIGGGVDRKLPFRNFSWRLQFDYVHTHLLSENQNEYRVSTGVVWRF
Ga0210410_10000001481	F003137	AGG	MARKKRVKRFAAVQAVKELARERMGTPPAGKVVPHKNKKPDKHKPTLDKLLEE
Ga0210410_10000001528	F003215	GGAG	MKGTLRMLRIVQWTMLGSILLYVVIGEVIRTGGRAVDPSVSYFFSTASVAIVGIIFVVRRTLVLRSAESLAAHPDDAASLSHWKNGYLATYVLCEALALFGLIQRFMGFNLQQSLPYYLGGFVLLFFFGPREPVSS
Ga0210410_10000001595	F000138	N/A	MHWINSFRVLFITLVSYIPLIATVVTCFFSLILARATLRYVEATDKGLNLAREEFEREWTPDLHIKLERVSSTEARVVVTNLARSSVLLQLLQLRKISHAVPFERCRLNDPLVGGMTWTEEMGKRILACTGKEFEGPIAASMTFYAAGRMFRTDWFRSHIQVRDGRILALEPSTMPARRVRVIERKGPERRREFVQDVAADAAPNKPDQKPDDQFFVTGA
Ga0210410_10000001688	F000092	GAG	VKQHLGRQSGVQTVEVSLLDGKVDVTPKADGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDSSGSLALQVEPNRSFAFTPNELSKGLESLTGTQTMVTVRGQLYKKPAGKKKADLSTRLTLLILEVEKKE