NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10231653

Scaffold Ga0210402_10231653


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10231653 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1703
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002139Metagenome / Metatranscriptome590Y
F018589Metagenome / Metatranscriptome234Y
F050630Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_102316531F018589AGGAGGMYRPYSSSQADPRPFRDVESQLRDLTQDFAMSFNTGNYDQAAAFYAADGVLMAPQYEPAYGPKPVERLLRQMGESGYR
Ga0210402_102316532F002139AGGAMTNRVVPAPQDFQKMCKQAERDHESKKLLVLMNRVKRQIAERNNPAFSVDVHKPPVTVIGADSGLSRLPSRSALFER
Ga0210402_102316534F050630N/AMGMEEKARAAAASDAGAVSSEAPASAPSGKFTFTRRFPRFAIDVRLQVKMFQDGEFRTCWGRSTEMGQDGIGATLTGTLENG

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