Scaffold Ga0210402_10065780

Overview

Basic Information

• Taxon OID: 3300021478
• Scaffold ID: Ga0210402_10065780
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3195
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F016576	Metagenome / Metatranscriptome	246	Y
F033167	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210402_100657801	F033167	N/A	VEGFVGASRSDSTITGPGGYTTSVNGMSFKFGGGVDYRPSRRLEIRLFDVDYYRTSFGTNAYQTNYWISSGIVLRLFGGNSD
Ga0210402_100657802	F000552	AGGAG	MAPIRRKLVWAEKSNFEGWACTECAWVFNPGGPLVGESLDEMKISYQTQRDKAFAVHVCAEHPRDTKNPR
Ga0210402_100657805	F016576	GGAGG	MKKSIQLIGLICFLIGIPPHLYADRAHDLAKQAAKQKAVTGCDPASLTALTCHTKFPTGCTESAHKYDAYLNFLKNQVPDSGWVSTAVLGKSDFVSLEGKVPNGLGSSNHAKSAPALAGLGEGNIVTVIAFLYFIEDTSKGANGSPSIGETTNCKLQLADSYDFHIGLGFDPVLAKQILKNKPQPIFGKPVKMDKTSVVAEMTPHTRGPKWTVARVNSLQGQQVKVVGQLMIDNVHLNVKDDCSFPGAVASCWRSTVWEVHPVAQFSVCNLKNKTCDASSPDSAWTSLDDVP