NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10061787

Scaffold Ga0210402_10061787


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10061787 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3293
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F006676Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_100617871F005865GAGGMPAPEPGPEWVLSGVNPRPDSATENELLKAARSAWPKALAHVRRVQSQDPFDDEGILVTEVWEGVLQSVSGTLDRMNGRRGEIGDLEAYLLGSFYHRLSRAIKKEQRREKTIHLVSSVQELEVLGTASHVEEHDIEGTLHAQEILDRMDAWSRKVWVAREYGYTWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR
Ga0210402_100617872F006676N/AMSRTTRPRAKSSENIFDRLGTVLVPLISMGQLRLSRAAAGCSEDLRTKYGINPERKKQSQPFRWLQEIDQILVVGMKYGPRGTQEAVKRVRQLTPELVPAQVWHRMRHLREKESSKSATPVDWSESAIEILRDGYRGGGRKKTEAIKTVRALYPGLAGYVVSRFARSQGWLEGRLGGKKRDGRRPWTREEEQELFARAGYEPVKAIAQKLRRSEQSVRLRLKGWAISARVTDGWSLRRIQQTLHLSHRRLQRLIGQGFLRVRDPRVSAISLAEYCDKHGAAIQPGIEEKIAGDLRSEAYSWGRVAKLLGVTTAEVGKRVANGDLKVMDPSMTDRSFEAFCRQHRSELNLDLMDPDVAQWLIDEYGLVTVA
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