Scaffold Ga0210402

Basic Information
Taxon OID	3300021478 Open in IMG/M
Scaffold ID	Ga0210402_10014953 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6634
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6634

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017404	Metagenome / Metatranscriptome	241	Y
F026812	Metagenome / Metatranscriptome	196	Y
F050161	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210402_100149533	F050161	GGAG	VQSFGKNHWKTVRAQFLFARVLLPLAVWAGTCCFSSPAQADNDVTLRETAQKLAERVATIPGLHGALRFEWHPDANWSEAESARWQAILKGEFEKRTLSLTEDAGAPALDVFAAETPTQIVLTAKMSLSERDEVRIVSMARSLLPSGSLLPSGSLPVAPIRLERQKIYDSADRILDASPLNNSEDDGLAILLYRNFEIVALRADLKGAVKETVSLNPANVKPSRDPRAELTMRGSSVSVLLPGKVCEFSWEAPSEMKCHAEKPSPSDKSGWRGQTLLASPCDGSSWKLLSSGGDPNAREVLQVVPDGAIRETSAAALSEFSGPIIGTNGERNPSNALVIARNLRTGNYEIYKITLACGN
Ga0210402_100149534	F026812	GAGG	LRRMAAAFVAWAMAMGAGMAQAQAPSCADLRAQKEKVYGFHLTQLNEAQIDTKSKEIDAYWKQLQSAGPDGVSCLKEMLSAEKTDHIFQFDAASFLFQLDKSPESLSLVKDAIVQTDFQETDPANYLSLALELGQRGANIQSLAARLLLFPNAIIHISEHSLDLDSDTAALFLYGSMDSAKASKALIAQLQAQEPFVRAAAAHLLAEEMTEEALRTLSTWGGLADVKEDYRRNDIQSVITYQAPNPAEFANPKWTREQVLQIIAGLPHTRKEFDEVMGTRGAEFDRQMREKKPSQEELAKAVAESEPIYGITDRTAFQNSAVATLKAEDFDTLREARRKALYNISDESLSEYLAYTQVMIRLMNRLDLYKDYRAH
Ga0210402_100149536	F017404	N/A	LILGVGLFSSSGILVAYDIYIAARLRWLLNTRGTNVRN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210402_10014953

Overview

Ecosystem & Geography

Associated Families

Sequences