NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10005284

Scaffold Ga0210402_10005284


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10005284 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11594
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072570Metagenome / Metatranscriptome121N
F092162Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_100052843F092162GGAGMTFTLTITLVLVSVAFVGLGFLITLARGRASASKVLDNPTEHIRAVDLAAFQNLVDPDEEAFLRTNLAPTEFRKIQRERLRAAVEYVSCAAQNAAVLLRLADAGRRSPDPATADAAEKLVQNALRLRLYALHAIPRLYLGMILPGVRISSVRVAERYEQMTRLVVLLGCLQYPTRGIATA
Ga0210402_100052844F072570N/AMLWYYLWIAPHVLQGIILFAMVRRGLLRQFPMFFLYTGFEILQSALLLVVAHFVSYFGTVYFQVYAVGLALSTAIRFGVIYELFSHFFQRYPALNGAGRWLFRGATLVLLVVAVGLAVFAPGNVMDHVLKDAAYASLKTTTFAADRAVSVLQCGLLISLFLFSRYFVLSWRSPAFGIALGLGTFAIAELATTAIRLYVPASDETFDVAGMGIYHLCVLVWILYLVRVEREPRINLQTLPKYDLEIWNRELERLVQQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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