Scaffold Ga0210402_10001120

Overview

Basic Information

• Taxon OID: 3300021478
• Scaffold ID: Ga0210402_10001120
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28185
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F006229	Metagenome / Metatranscriptome	378	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210402_1000112010	F006229	AGG	MATATETSTASLVNISMEKWPPRHRTYFGSLQISSPESGETFAVTPIRGCNGVIDLGDKRIMEIRITAREVAEDIAREINGDSGEGSFHGVFVAAGEMPTEGELADARRRLEEFHRRLVAAADLEWERTHNPMFITDLERRAARQLRLEKPWLYDSKPLAECPVCAEKIKHGVAVCRSCGAILDREKAAQYGLVAPEKTRRDASASQDRAGKQSNEAGK
Ga0210402_1000112014	F000696	GAGG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDAVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFVGATQDTQIRLRYAKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
Ga0210402_1000112015	F000739	AGTAG	MNRFELWLKGVVAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINSVIGVAAYLQKSPLPAD
Ga0210402_100011205	F000624	GGA	MPIHWSTILAALVPVGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYSALHAIARQQGIDPQEPPLVRFVEFQGHRRHD
Ga0210402_100011207	F000703	N/A	MQIREYRESDLATLRAIHAAQAFEYPLPDLSNPLFVTKLILSKGDEENESHHNEPPPERIIGAALLRLTAEAYLLLDPNPGTPRQRWEWLLQLHAATERDAWQRGLEDVHAWLPPPVARAFGKRIAQLGWKRDDTWTPYCKRLHP
Ga0210402_100011208	F000781	N/A	MLTVAQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTAVASINVQASNGWFDISVTDPSDARPGLFYFAESDTTPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGSPPTAVTGGGSAGPAPLPSSGSGVLPNGQVRGGNGFGTNPGSRVTRQTIL