NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000495

Scaffold Ga0210402_10000495


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000495 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44300
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (91.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041752Metagenome / Metatranscriptome159Y
F048382Metagenome148Y
F068279Metagenome125Y
F080575Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_1000049521F041752GAGGMSDVTQAAPEQAQEVKTTKSIVPSKYSGRYKNGGDDPLAVFIKEQCKVQGGDFDFERFFELCSKNGIAQEKVDHYRAQVAEKRHGAQGRARMTLRNMLATIVRKNGKATGLDGSEVAINLPKPALTGAAKEASDATSTEAANPAAA
Ga0210402_1000049528F080575GAGGMPYRPGDPTVEVEGRIETSTAKAYLIEPTMSKKTEVWLPKSQTVGMTDPDDNGVRVFTVTQWWYKQSGMEEDE
Ga0210402_1000049552F068279GGTGGMTTFLTDKCTEIRNWLAIGADVYSDQVVTGWIRMAEEYLSVALRVKHMVQIDTSNIINGRVPMPLDWQEIRLVRRLDTNGVCRYQTPDAFYNPEFPNSPSYPTGTGQKCDTQLNRYTILGNFLIVGDAPSSSNPVTVEMTYYQNIPPLADNANNWPNYYHPTVYTLKILHVASMYSIEDARSQVWDQEVVRMVNGMNAQHKIDMASGSVLMPVRRKTFG
Ga0210402_1000049567F048382GGAGMSKRKHKEVVEPVVEPVVVEPVEPVEPVEPEVEIDAEVAEEIVKRSSVVRPAYKKRYAERAAANGGGKVAQRSCWDWLAQTLAGECLVGSKISIDRFLALLDANGVDHSRWNNRNKGWEGRLRMTGRLALQKVVAAQGVLKTADGETLEAPAEWVAKHTH
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