NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000083

Scaffold Ga0210402_10000083


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000083 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101513
Total Scaffold Genes101 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (72.28%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F000828Metagenome / Metatranscriptome872Y
F013651Metagenome / Metatranscriptome269Y
F047775Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_1000008325F000828N/AMRATDKSIFDEQYRVVAIESDRLVVRGILSGEVLTIVNPVPASPLSKEDFPPGKLIALSDPSTVPVN
Ga0210402_1000008372F000262N/AMDNSLENERGSRSGVRRLIRFSLVGGVALYFVSALSCGGINFGEVQPQDLCKCVPLEPPGADFRHYQKHVPISNLTPIETTVDTILSWPQDIIILPDAPRTGRELQVFHVAQAFLQNVSVNGEDCDVDLEISQTADRNAPRVIVETPVDSEFCSARKSIQSQLAQHGFRLDVEHGGELPQALPVEVLGMAFEDFEHNRGSGQVATLWELHPATVNLLP
Ga0210402_1000008389F013651GGAGGMRFPRLLWLLVGIVVVPATLRTQNVNPMHPEEIQVQKHASPEDMRERLGNVQLQKDAKDLAELCASVPRDMDSVKQGVLPKDVLEKLKRLEKLSKHVREELTRVTTP
Ga0210402_1000008391F047775GAGMTDENTDDLCKDCGPTFTAFLEAMADHNKEQMELNAKVICSTCGKVHEYTFPYAPKATVPPASAP
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