NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000049

Scaffold Ga0210402_10000049


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000049 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119194
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (68.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001385Metagenome / Metatranscriptome709Y
F003701Metagenome / Metatranscriptome473Y
F008699Metagenome / Metatranscriptome329Y
F022717Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_10000049109F001385AGGVTDPANPIPAGVRAIAIVFALCGIYLGALGLTMLARPGLISMAAGAPLLFGLELSGPYMFLLTGVVGGAIAWGLTRLNNLARHAATLAAIAGIAMLVPSVSGAVIMVQLKGLVTGGLGIIIRVMIAWYLSQGHIADEFKAPKHT
Ga0210402_1000004913F022717GGAGMQSIIPSVIAWLTLCVLASPQEKPRELRGDGHLLGETAEQFFSEGFLGDILRACEARDWKAVNQLSNHVVHASKSDAKDYCANTKLARQEATSGIRLEYAGRGDGEAMRADIFTFEAGHLVRINMVYSAPAANVEGYHPKSYSELFEGLHEAYGPPSKSYSEPMLSAYGVKYEAHRALWMGNADVISIIEQPREAGRTEIIAETLAEYNRAAQEPKIANPLR
Ga0210402_1000004935F003701GGAGMRNAWLAFCLLLAGCSAKKQPVAVTPPPIRSQLPPPSADLIEHCVVVKQENANTVTCSCLVVTTVIDSKTGHTKLVCKKMKEEK
Ga0210402_1000004936F008699GGAGGMVFSAESIALSYDNVPAAKQWWMNTFDCKAVPVPSDWDNPLPSDVALKFPGNDEAAILLSARTEVEQAGFDRSSPVVSVIFCNKLKKAHEQLSGRGILVGPIQDGGDTEFFEIRDTEGNLLQVCKEH
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Institute for Fundamental Biomedical Research
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