NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10000018

Scaffold Ga0210402_10000018


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10000018 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)150265
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (79.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000131Metagenome / Metatranscriptome1986Y
F000482Metagenome / Metatranscriptome1089Y
F001063Metagenome / Metatranscriptome789Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_10000018100F001063GGAGGMESLLQFVVVVGGLMFSLATAILIEELIFGRIFRVVFARRPEPSNPGQQQ
Ga0210402_1000001834F000482N/AMQVSRTHLGIAIGAGALLVLVFVGYLWWLSNQPPVLARSEERDPLTHMPLTITMNPFRDRTIEKISAAFIKEMRDGNCHKVLAQWEKKKDYRKKRADFICDSETQHPLISWNLVEWEDAPPLIILHYKGERYSSPSQDATYKDLFSVTLENKDGAWSVTKYDAFY
Ga0210402_1000001883F000131GGAGMKVLRKILRNASRWTVCAALTVAAAFSQPQQISLLEIVAPSTVISKDGRPVVFALHGFIEFRSLAEMLPYIEAQSRRWPGKLSSEERSQLAGELLRRGIESRVVSMADERPLEELLTHTADELRQALVAVKEPTPLGYAEAFLAVQKKWKHSVNCWSASSSLPARVLSNWYPIAEGIHLYGATYDSTEHFWQAAKFHPDTPVADLTELLDAFDQKDWSPWLARLDGDPKLYLPNAYAVEFLRHNLTPERLRWFRDELSRHGLQPSDRARVVQQRGATSFRFSAFEEKVLWGDLADVFHLVYAFSLPTDPIRAKLAERHFDFIYLDGRRFGFISEEYRSLMLEIWRVKYLQMPRFGEVIRSIPMEIRLEHFLNDGDSPDIPIPIYVGYLNQIRDLARAQHPGAQ
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