Scaffold Ga0210402_10000016

Overview

Basic Information

• Taxon OID: 3300021478
• Scaffold ID: Ga0210402_10000016
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151223
• Total Scaffold Genes: 136
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 121 (88.97%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001352	Metagenome / Metatranscriptome	717	Y
F003596	Metagenome / Metatranscriptome	478	Y
F005124	Metagenome / Metatranscriptome	411	Y
F007233	Metagenome / Metatranscriptome	355	Y
F016200	Metagenome / Metatranscriptome	249	Y
F018423	Metagenome / Metatranscriptome	235	Y
F020266	Metagenome	225	Y
F082760	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210402_10000016109	F007233	AGGAG	MAKRKHERQERKLNLDTFKRSIRGKVLEAVSITNELESRYISLEFQDQTELTITLDVRLTGKLELFDCKTGDQRLVRKIGLVPDDTPLWRPQG
Ga0210402_100000166	F018423	GAG	MRGTHGVALAVLAYTSLTFAQNDLPTFSAESASAFVWGDDNPSNTVSSSIHDPLTGNVIHKLSHAGIEVSSQAGFESIGYGAAGELLSFTTTIANNTESDLSVRRGGASIDGHLAFPLSVVPTTKGLAKRKRTQVWELTKMTCFLSGFLAHENYFSPNDTSKVFTIPPKSASKISFITQDPRKYPFRCSMEGCYPTGTTRFYVTINATDYIFVWQGRSSINCGK
Ga0210402_1000001671	F082760	GGAG	MRKKVFSATSLLLTTSLSLIAIAQQGTGATAPQTTTVKGHGCIKPGSVSGCYVVNDYKAHRKYNVFFRDAKPDMDTGISFEGIAYGHRDPHCNQGQKVDVTEWKPLAGECPQTEKK
Ga0210402_1000001682	F020266	GGAG	MKRLLPLVLLVAVAAEPQNAPMEKPCIAFSQESDSPTNASAKAPLEAAVMKSGDFDFYPSRHDGCWTVHVLSLPINNAKGRAMGYAISQTVTDPESVEVGHALTFGPGREIFLRAMNRAVADAIRSIRLARAREPRNQLR
Ga0210402_1000001693	F003596	AGG	MMLKLLIKVGVSALVLMLAALPVAACVLPGAAMTSAERECCKKMAEQCGDMRMAKSHPCCKATATPADFHALKTVSAQLDHVSLVLFHALPLTSQTDAYHSLAQWSSRVSCTHSPPGLESLTTTVLRI
Ga0210402_1000001695	F001352	GAGG	MSSRELSPEWVLSSFIPPIAAPQHEISELIVVARRLWPRIQAHAHREQPGKGSDEALDFASEVWEGVLRSVAKTIQRSNGRNWRIKNMEAYLFGAFHHRFNRALKKERRRLQTIHHLPSSRDLERLRQAHDSKAVRDLEQSIQLKEAVRNMDEWTRKVWAARQYGYSWKEIATQLGLTEPQAKLRFRYAIGKLRARLGGAM
Ga0210402_1000001696	F016200	AGCAGG	VRNRPQVQTAAVVVLDLRDRATVRGVGPPETSQLPLEVPRNARTLNLELPIGSNEGAYEMALLDPSGAELFRTSSTAKLEDHIVVLRADVAFVGISPGLYFLGLRQPGLEWMRFPVRVL
Ga0210402_1000001698	F005124	AGG	VVLRTCTVAVKDVRDVEHSVEVTAETLYEAIATALATLQQDNWVGEIGQGFTTVTVAVQQPPVKHEVKMKDFVSWLGRQGRSPAEVVLKQKLEKILGKVNQARR