Scaffold Ga0210398_10176411

Overview

Basic Information

• Taxon OID: 3300021477
• Scaffold ID: Ga0210398_10176411
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1741
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000063	Metagenome / Metatranscriptome	2803	Y
F005065	Metagenome / Metatranscriptome	413	Y
F014401	Metagenome / Metatranscriptome	263	Y
F018222	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210398_101764112	F014401	GGAG	MNTSKLGPPHKRVWAQFYKAALFESDTNNVSGRIAEAETALVIRARELFDSAEDNIEEEQAVDDAMYALHALRSALKCRENVQNTPEDLAA
Ga0210398_101764113	F005065	GGAG	MMDANYVSERIDNIKQEISDLRVTTAVHWNKSQHTALEKSAYALKKGRLREIKRELSGLMKRRA
Ga0210398_101764114	F018222	AGGAG	MHSDPRKTWQYFAHAVIREDDPAKLTYLMQELYRVLKDNREEPSLA
Ga0210398_101764115	F000063	N/A	MLTEGVWAEVQVGNVHLRLFSEKNAQGTQASVYNVSTKSWIAPSEEVENIEEGKEKTSEHARAYLKHVANSELPPLEWKTSRSR