Scaffold Ga0210398

Basic Information
Taxon OID	3300021477 Open in IMG/M
Scaffold ID	Ga0210398_10000008 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	298905
Total Scaffold Genes	285 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	200 (70.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

298905

Total Scaffold Genes

285 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

200 (70.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018570	Metagenome / Metatranscriptome	234	Y
F025793	Metagenome / Metatranscriptome	200	Y
F027915	Metagenome / Metatranscriptome	193	Y
F057546	Metagenome / Metatranscriptome	136	Y
F083074	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210398_10000008202	F083074	GGA	VRAVQRRYHELMATRKINLPLDEELVRRAREQDVGPGSKSDAQVVEDALSVFLGLRALDDARAQGTLEPEAADELAVAEVRAVRRAHSRA
Ga0210398_10000008214	F057546	GGA	MARLLLPVILATLLLPASANAHASRSHQPHAAAARTVLRRTSIARAEAHKPIQRPTTNPVALSLKLAERYWHGVPACGTPTIVKSLKQLPTSDYETVTSPEPADSVVEMWTEVQNCTITINASLWPSWHQDDEFFQWFCDAMTHEVGHLFGHLDSGQTNPSSITYPFLDSTSPNFNSVPECRGVTLQYGTEEIRDEEIFDHH
Ga0210398_10000008269	F018570	AGGAG	MSRKIQIVLPDPQADQLAELAAGAGEPLSTLAGLFVRTGIAQAAKDGKVRQLRQAPIIVVGGGDRARWLEPYGGDPDWRQEMWGQIVALHGRYPRALANLKDDWWTDDAHTERLCALATWRSELDDAGVDPRDELAFQTQLNDYAHTLRQEGGGVTKTWTPGAPPDEWGGPSEQSG
Ga0210398_1000000862	F025793	GGAG	VSTISKKTDELFMAASLSDGDLGYPADVEFVPADEEWADEVVWRNLIEGQATVLVGEESELLLTPLRRGPLDRLRGRVPVNVSHRVHGHATPYAMPSRLGRHPVRQMRQLAHA
Ga0210398_1000000863	F027915	N/A	VKDRRRRRRLARDVRIVIERTSSYPIEYAIMLVVRRAGRWHTVRTFDNAHDSQEHHEHRYVGPEKQPPSITRGPVNEAMHAAELKLLDGWRDIVDEWERTL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210398_10000008

Overview

Ecosystem & Geography

Associated Families

Sequences