Scaffold Ga0187846

Basic Information
Taxon OID	3300021476 Open in IMG/M
Scaffold ID	Ga0187846_10001653 Open in IMG/M
Source Dataset Name	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021476 Open in IMG/M

Scaffold ID

Ga0187846_10001653 Open in IMG/M

Source Dataset Name

Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12522
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12522

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Brazil: State of Minas Gerais
Coordinates	Lat. (^o)	-19.8881	Long. (^o)	-43.6761	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brazil: State of Minas Gerais

Coordinates

Lat. (^o)

-19.8881

Long. (^o)

-43.6761

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012377	Metagenome / Metatranscriptome	281	Y
F042179	Metagenome / Metatranscriptome	158	Y
F072926	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187846_1000165311	F042179	GGAG	MKGATFLLLLGIALGPAMPSFAQAPEAISSASEEPGSVIVFPKFTKGTVVVDGVTRPQTEIEVRARCPSGATCTEDEPVKIRFHWVCPGNSDKASHYVCKETDFDVRLSVNGKASFNPENPDLLENSVGSAAPCASGYLIGWVISPVTGRPIKYDGLTGSAILRDGRGAIQSYDAFAIQADRNLANRAEIATDIDPRTGTPALVFDGGAAHYQVVAGGIPEDLEYHKLTGPLATGNAPLILLTLDVRLNRPNYPTFVDFDFRSEEGGLASTAWNFRCWTEIQHPAIDANFTLAGARNHNGVILAGRAEKVPFGPVSDIPGPVTLLGLVPADDGHGRTMDPVYILQKSDSGKPTTVFVPFETTEHTVQ
Ga0187846_1000165312	F012377	AGAAGG	MKFKTKGGWLAGLLVPALALAAPAFAQVRPTTLSDSQEPGSVIVFPKFVQGSVVLPEGGTAPITELEIGVVCPKGVVCPEHEPVKIRFHWVCGTTEADIANSFICKETDFDITATVWEKIVLTPNSETAGFYTAGLPSKFAPGANCPNGGGYLIGWVITPTSDTPIKFDALIGDAHLRPGAPASATPLGSPTALAGYDAIPIQADPALANGAAITTNSNGALVFDGGAGHYQAVTGQVLGDIRYTNLTTGPTFSLGVLTLLTLDVRSNRPNNPT
Ga0187846_100016538	F072926	GAG	VSGAHSTNCQPVEYMVKRAALGISVLAVLAVVAAVASEDIGGWHEAKWGMTPDQVQKVLDYPASVADLAKVCREPCNEAEALELDDYDLNGQHFTVRFWFGKPDSRLEGVSMHAKQLDQADGQEALMKIKNFLETSYGAPGSIGMDRGHFVFLWTLPSTKITLYSDATNDMTILYEQRKEKENGKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187846_10001653

Overview

Ecosystem & Geography

Associated Families

Sequences