NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187846_10000727

Scaffold Ga0187846_10000727


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10000727 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18709
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033983Metagenome / Metatranscriptome176Y
F036897Metagenome / Metatranscriptome169Y
F042652Metagenome / Metatranscriptome158Y
F051615Metagenome / Metatranscriptome143Y
F064178Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0187846_1000072713F036897GAGMFEKTVFRWPPQPSTVVGFGILAGAVCYFVTGDPVWAGLAAAAVKILVPDNSAAASQVFEAIEILAQSVGRPLPPLSQPVPVCSGDRGSNAKTLCRGPLGKMTGYRTPSRGSLAGC
Ga0187846_1000072716F051615AGGAGVSDLVALRAVFPVWDAVGHGTERYAHDLDGVVRVPREAAVHLLHNGGYVFHDRGIAPALDNDVARTVPR
Ga0187846_1000072717F042652GGAVTTNEAITTTMTPDDPVVKAMQEITRAVFSAAKLFGVPAALEGLANILIINLAGAYGEKVAMSTLGYIATNATPIARMWSSVAAAADHEPGHA
Ga0187846_1000072721F033983AGGAGMPVEDSEGPAISPADNAGSPIVSESRAVSIDHLIERWWRDHFPGSAIARDTQAWNAAYAAKETLKRLLKGSI
Ga0187846_100007274F064178AGGMSNPLSVASLATFPLGPGQPTDNLTALPNGQAKGLGALGTSLVQYYDDIVAPIRIKSGGSVSGSGTASLFLVCSEDGTTWTNGINPNSTLDQSSLLGSLASLTPVVTVAANAALYYFPEFSVYSLLGFMPTFWAIVVYNQSGAALDSTAANFIAQHSLVSYA
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