Basic Information | |
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Taxon OID | 3300021476 Open in IMG/M |
Scaffold ID | Ga0187846_10000311 Open in IMG/M |
Source Dataset Name | Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 29153 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (80.56%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Brazil: State of Minas Gerais | |||||||
Coordinates | Lat. (o) | -19.8881 | Long. (o) | -43.6761 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F023267 | Metagenome | 210 | Y |
F089487 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187846_100003117 | F023267 | GGAGG | MAGKDAIEVEAADHDIREILATIQDQGRQTLELLRTLINLIVGIVGDREGPPLEDLIATLVAQNRDLLTIARRIHANVRAIGDRLPAIVSPEQDDHGESPEASRS |
Ga0187846_100003119 | F089487 | AGCAG | VLAAEVTADAEHGPHVLVRAATGDEAAYLLCSDDEQDADRPESAGRDITWQQAEDSEYLTEPAVVLWSGEVLLKTGKGLAGRFYTHQSAAAAWAFSTALGLASAEVFGAQLVRWLCAGSNADLLLAGADGEFQRLNRFWITPIRPAAVFPIPLPGQEHERVEALS |
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