Scaffold Ga0210390_10021636

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10021636
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5236
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014038	Metagenome / Metatranscriptome	266	Y
F027929	Metagenome / Metatranscriptome	193	Y
F029572	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_1002163610	F029572	N/A	VSGGSVKHMEKRRLRVLKWLGTIPAVGTCTSCNREFKVPLTAMRRIADAQESLKLQFAEHQCEGED
Ga0210390_1002163611	F014038	N/A	MKVTLEDALSLLSKYVEERTPVLAVFVTPSVSVARVTGTIHISVVDGVTPHLIVGKEDGASDQIKFRLSDCNFEYGDFRDATAEDFGAHKFEGFLVVASSRGDTLSLFEIKR
Ga0210390_100216364	F027929	N/A	MKLSKVFPEFKKITTQCELRRTLEFTINRTSYRVEVLYCYSNPKSPWIAQAYSEKRNGWKSVPDFPWVGERNEEAAIRAALSFLEDLHR