Scaffold Ga0210390_10003158

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10003158
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14241
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001352	Metagenome / Metatranscriptome	717	Y
F005124	Metagenome / Metatranscriptome	411	Y
F007429	Metagenome / Metatranscriptome	351	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_1000315810	F001352	N/A	MQAFINLAIKSVVGLRPPLMSASRELSPDWVLSSFIHSSGNSRDEMMELADAARRLWPCVQAHARKEQPGKSFDEAIALATEVWEGVLQSVAKTLQRSNGKRAQIDSLDAYLFGVFHHRFNRALKKERRRREILRSLPSDSDLGRLTQAHHSEVHRVLEQSIQVQEAVRRMDEWTRKVWAARQYGYSWREIAEHLDLTEPQAKLRFRYAIGKLRALFRRGG
Ga0210390_100031586	F005124	AGG	VVLRTCTVAIKDIRDVEHSIDVTAETLYEAIATALASLQQDNWVGEIGQGFATVTVVVQQPPVKHEVKMKDFVSWLGRQGRSPAEVILKQKLEKILGRANHART
Ga0210390_100031588	F007429	AGG	VDAVFYPVALNVIPMKKKQKPAEKTRPAIKPTAQNERLKGWNEIASFLGQPVAAAQRWARSGMPVTREGRFVYASREELSGYLGREAGLDVPVHIATENIDLSADLKLALAHARACKHDKKKKAKR