Scaffold Ga0210390_10000010

Overview

Basic Information

• Taxon OID: 3300021474
• Scaffold ID: Ga0210390_10000010
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 262339
• Total Scaffold Genes: 266
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 212 (79.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004875	Metagenome / Metatranscriptome	420	Y
F005421	Metagenome / Metatranscriptome	401	Y
F005890	Metagenome / Metatranscriptome	387	Y
F037877	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210390_10000010131	F005421	N/A	MLWTVVAESTHNHPSQTESASCSICAVAHSASPVASSNQARPIFAAVGLLHEEKIIAKAQLGVFELGIRGPPTV
Ga0210390_10000010251	F004875	AGGA	MRTFSTFVLATLRVGALVSVILLLSGLGLAQKVVTARATIPFTFWAQDHEFQAGDYVFDNEVPGTAAIHREGINSGIGVSIILYAIPQEKENPRVIFVRRDGTYCLFELWSVQGRYVVTAEFEHRGEASEQQRQVPLTIVESHDE
Ga0210390_1000001030	F005890	GAGG	MSFHATNPASFSYLSSCAVESANKSLSTRNYGGELRPSYDGTCPSNRTAIAVNFRSQCADDNLALERVYRYVSRLLLGHSFGAFPAPGGTRSSASRCAPLRGLGSSQNKFENHGKERLSNFFRAPPRKQTFGTWEPGPTR
Ga0210390_1000001042	F037877	AGGA	VPNICSGFVGGFCQIGVNLDRPEQSAEVVVQMVQVLEESEICRRFGGGSDRNRALLGNEGNSMHDMQLVQSRINTAYFVSR